If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ), 'gf_id' => 'HOM05D000687', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000687' ), 'data_identifier' => 'HOM05D000687', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000687', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '833', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p30510' => 'bna', 'A02p37480' => 'bna', 'A03p07740' => 'bna', 'A03p35270' => 'bna', 'A05p17590' => 'bna', 'A05p40740' => 'bna', 'A09p04510' => 'bna', 'A10p11760' => 'bna', 'A10p19890' => 'bna', 'Aa31LG11G13250' => 'aar', 'Aa31LG2G9170' => 'aar', 'Aa31LG3G10480' => 'aar', 'Aa31LG5G18030' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1300' => 'aag', 'Actinidia05552' => 'ach', 'Actinidia06289' => 'ach', 'Actinidia06290' => 'ach', 'Actinidia21262' => 'ach', 'Actinidia23354' => 'ach', 'Actinidia23798' => 'ach', 'Actinidia26966' => 'ach', 'Actinidia30012' => 'ach', 'Actinidia35302' => 'ach', 'Actinidia35837' => 'ach', 'Actinidia39361' => 'ach', 'Ah.02g111140' => 'amhyb', 'Ah.04g161580' => 'amhyb', 'Ah.04g165200' => 'amhyb', 'Ah.09g237000' => 'amhyb', 'Ah.11g050970' => 'amhyb', 'AL1G63310' => 'aly', 'AL2G14530' => 'aly', 'AL3G18780' => 'aly', 'AL3G18790' => 'aly', 'AL6G27310' => 'aly', 'AL6G31390' => 'aly', 'AL8G29900' => 'aly', 'Aqoxy1G00070' => 'aox', 'Aqoxy1G03238' => 'aox', 'Aqoxy2G04046' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0CMJ96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0UU0DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1U8UFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6YF7SG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5SVB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5NJTB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWIZ6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8CKZE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCQ5GJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P126ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL0MZ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WGU3TA' => 'arhy', 'AT1G55265' => 'ath', 'AT1G61667' => 'ath', 'AT3G07460' => 'ath', 'AT3G07470' => 'ath', 'AT5G16380' => 'ath', 'AT5G19860' => 'ath', 'AT5G54530' => 'ath', 'ATR0001G017' => 'atr', 'ATR0584G169' => 'atr', 'ATR0804G067' => 'atr', 'ATR0824G024' => 'atr', 'ATR1134G067' => 'atr', 'Atru.chr10.2075' => 'acertr', 'Atru.chr10.2076' => 'acertr', 'Atru.chr10.2078' => 'acertr', 'Atru.chr10.2085' => 'acertr', 'Atru.chr10.2086' => 'acertr', 'Atru.chr10.2088' => 'acertr', 'Atru.chr10.2089' => 'acertr', 'Atru.chr10.2090' => 'acertr', 'Atru.chr12.1734' => 'acertr', 'Atru.chr12.1738' => 'acertr', 'Atru.chr12.1742' => 'acertr', 'Atru.chr2.3115' => 'acertr', 'Atru.chr2.3129' => 'acertr', 'Atru.chr3.2283' => 'acertr', 'Atru.chr3.2323' => 'acertr', 'Atru.chr6.3541' => 'acertr', 'AUR62000020' => 'cqu', 'AUR62000021' => 'cqu', 'AUR62008116' => 'cqu', 'AUR62012557' => 'cqu', 'AUR62014642' => 'cqu', 'AUR62019192' => 'cqu', 'AUR62028694' => 'cqu', 'AUR62029273' => 'cqu', 'AUR62044054' => 'cqu', 'BcaB01g04984' => 'bca', 'BcaB02g10833' => 'bca', 'BcaB03g14700' => 'bca', 'BcaB04g20355' => 'bca', 'BcaB04g21290' => 'bca', 'BcaB05g24458' => 'bca', 'BcaB07g30019' => 'bca', 'BcaB08g35811' => 'bca', 'BcaB08g36565' => 'bca', 'BcaC01g04281' => 'bca', 'BcaC02g10548' => 'bca', 'BcaC03g13718' => 'bca', 'BcaC03g17653' => 'bca', 'BcaC03g18489' => 'bca', 'BcaC04g19384' => 'bca', 'BcaC04g20330' => 'bca', 'BcaC04g23776' => 'bca', 'BcaC05g25527' => 'bca', 'BcaC05g29537' => 'bca', 'BcaC06g31857' => 'bca', 'BcaC08g44184' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00030' => 'bna', 'BolC1t05548H' => 'bol', 'BolC2t11713H' => 'bol', 'BolC3t13392H' => 'bol', 'BolC3t16557H' => 'bol', 'BolC4t27655H' => 'bol', 'BolC5t34639H' => 'bol', 'BolC6t36781H' => 'bol', 'BolC7t43571H' => 'bol', 'BolC9t53409H' => 'bol', 'BolC9t55794H' => 'bol', 'BolC9t57358H' => 'bol', 'BolC9t58498H' => 'bol', 'BraA01t03183Z' => 'bra', 'BraA01t04379Z' => 'bra', 'BraA02t08735Z' => 'bra', 'BraA03t10101Z' => 'bra', 'BraA03t12705Z' => 'bra', 'BraA05t20652Z' => 'bra', 'BraA05t22805Z' => 'bra', 'BraA09t36086Z' => 'bra', 'BraA10t43275Z' => 'bra', 'BraA10t44064Z' => 'bra', 'C01p38890' => 'bna', 'C02p08290' => 'bna', 'C02p56550' => 'bna', 'C03p08960' => 'bna', 'C03p42890' => 'bna', 'C04p27610' => 'bna', 'C05p59850' => 'bna', 'C06p15890' => 'bna', 'C09p04820' => 'bna', 'C09p44870' => 'bna', 'C09p56290' => 'bna', 'CAN.G1110.20' => 'can', 'CAN.G158.8' => 'can', 'CAN.G162.133' => 'can', 'CAN.G181.40' => 'can', 'CAN.G190.3' => 'can', 'CAN.G30.14' => 'can', 'CAN.G424.86' => 'can', 'CAN.G575.6' => 'can', 'CANSAT11G0322' => 'cansat', 'CANSAT11G0886' => 'cansat', 'CANSAT11G1949' => 'cansat', 'CANSAT56G3308' => 'cansat', 'CARHR044920' => 'chi', 'CARHR050670' => 'chi', 'CARHR082110' => 'chi', 'CARHR082120' => 'chi', 'CARHR193000' => 'chi', 'CARHR196880' => 'chi', 'CARHR267810' => 'chi', 'Carub.0001s4377' => 'cru', 'Carub.0002s0349' => 'cru', 'Carub.0003s0701' => 'cru', 'Carub.0003s0702' => 'cru', 'Carub.0006s1457' => 'cru', 'Carub.0006s1822' => 'cru', 'Carub.0008s1481' => 'cru', 'Ca_00212_v3' => 'car', 'Ca_07483_v3' => 'car', 'Ca_07999_v3' => 'car', 'Ca_18463_v3' => 'car', 'Ca_18831_v3' => 'car', 'Ca_29635_v3' => 'car', 'Ca_30090_v3' => 'car', 'CBR_g34519' => 'cbr', 'CBR_g34520' => 'cbr', 'Cc01_g02430' => 'ccan', 'Cc01_g02450' => 'ccan', 'Cc01_g16080' => 'ccan', 'Cc02_g11920' => 'ccan', 'Cc05_g12970' => 'ccan', 'Cc09_g03880' => 'ccan', 'CDE04G2611' => 'cde', 'CDE05G2331' => 'cde', 'CDE05G2387' => 'cde', 'CDE05G3074' => 'cde', 'CDE05G3185' => 'cde', 'CDE05G3261' => 'cde', 'Cfa000293' => 'cfa', 'Cfa006245' => 'cfa', 'Cfa009609' => 'cfa', 'Cfa020472' => 'cfa', 'Ciclev10009710m.g' => 'ccl', 'Ciclev10012904m.g' => 'ccl', 'Ciclev10016907m.g' => 'ccl', 'Ciclev10016930m.g' => 'ccl', 'Ciclev10016939m.g' => 'ccl', 'Ciclev10016994m.g' => 'ccl', 'CiPaw.07G081800' => 'cil', 'CiPaw.09G153800' => 'cil', 'CiPaw.10G113600' => 'cil', 'CiPaw.11G180200' => 'cil', 'CiPaw.12G124600' => 'cil', 'CiPaw.13G174300' => 'cil', 'CiPaw.13G174400' => 'cil', 'CiPaw.14G044800' => 'cil', 'ClCG02G023930' => 'cla', 'ClCG03G012060' => 'cla', 'ClCG05G015000' => 'cla', 'ClCG09G008170' => 'cla', 'ClCG10G006100' => 'cla', 'ClCG11G009700' => 'cla', 'COL.COLO4_09243' => 'col', 'COL.COLO4_09534' => 'col', 'COL.COLO4_31668' => 'col', 'COL.COLO4_35000' => 'col', 'COL.COLO4_35001' => 'col', 'Cpa.g.c39995' => 'cpa', 'Cpa.g.sc119.80' => 'cpa', 'Cpa.g.sc123.29' => 'cpa', 'Cpa.g.sc8.66' => 'cpa', 'Cpa.g.sc80.127' => 'cpa', 'CsaV3_1G043700' => 'csa', 'CsaV3_2G010570' => 'csa', 'CsaV3_3G005670' => 'csa', 'CsaV3_3G022640' => 'csa', 'CsaV3_4G023420' => 'csa', 'CsaV3_7G026870' => 'csa', 'CSS0004433' => 'camsi', 'CSS0004476' => 'camsi', 'CSS0010031' => 'camsi', 'CSS0018057' => 'camsi', 'CSS0021648' => 'camsi', 'CSS0032662' => 'camsi', 'CSS0034142' => 'camsi', 'DCAR_004168' => 'dca', 'DCAR_004770' => 'dca', 'DCAR_008105' => 'dca', 'DCAR_012696' => 'dca', 'DCAR_018619' => 'dca', 'DCAR_022501' => 'dca', 'DCAR_024335' => 'dca', 'DCAR_024340' => 'dca', 'DCAR_030002' => 'dca', 'Dinv02832' => 'din', 'Dinv06332' => 'din', 'Dinv13433' => 'din', 'Dinv13434' => 'din', 'Dinv15388' => 'din', 'Dinv17860' => 'din', 'Dinv18958' => 'din', 'Dinv22330' => 'din', 'Dinv28807' => 'din', 'Duzib128G1165' => 'dzi', 'Duzib138G0525' => 'dzi', 'Duzib150G0869' => 'dzi', 'Duzib150G1088' => 'dzi', 'Duzib170G0232' => 'dzi', 'Duzib170G0479' => 'dzi', 'Duzib177G1153' => 'dzi', 'Duzib192G0062' => 'dzi', 'Duzib211G0311' => 'dzi', 'Duzib213G0025' => 'dzi', 'Duzib235G0318' => 'dzi', 'ECA232G0229' => 'eca', 'ECA236G1994' => 'eca', 'ECA238G1047' => 'eca', 'ECA247G2151' => 'eca', 'ECA248G1288' => 'eca', 'ECA248G1975' => 'eca', 'EL10Ac4g08015' => 'bvu', 'EL10Ac4g10354' => 'bvu', 'EL10Ac4g10355' => 'bvu', 'EL10Ac5g10620' => 'bvu', 'EL10As6g23654' => 'bvu', 'Eucgr.D00880' => 'egr', 'Eucgr.F03389' => 'egr', 'Eucgr.H00722' => 'egr', 'Eucgr.J01799' => 'egr', 'Eucgr.J01800' => 'egr', 'FAN02G0648' => 'fan', 'FAN09G1120' => 'fan', 'FAN11G1656' => 'fan', 'FAN11G2123' => 'fan', 'FAN11G2469' => 'fan', 'FAN11G3767' => 'fan', 'FAN15G3252' => 'fan', 'FAN16G1395' => 'fan', 'FAN16G3473' => 'fan', 'FAN21G0101' => 'fan', 'FAN21G1817' => 'fan', 'FAN21G3261' => 'fan', 'FAN21G3570' => 'fan', 'FAN24G0520' => 'fan', 'FAN24G2771' => 'fan', 'FAN25G0537' => 'fan', 'FAN25G0545' => 'fan', 'FAN25G1069' => 'fan', 'FAN25G2094' => 'fan', 'FAN25G2939' => 'fan', 'FAN25G3332' => 'fan', 'FAN27G2539' => 'fan', 'FvH4_2g17710' => 'fve', 'FvH4_3g03180' => 'fve', 'FvH4_3g21500' => 'fve', 'FvH4_3g44860' => 'fve', 'FvH4_3g44990' => 'fve', 'FvH4_3g45000' => 'fve', 'FvH4_6g00340' => 'fve', 'Glyma.05G154700' => 'gma', 'Glyma.06G262800' => 'gma', 'Glyma.07G188000' => 'gma', 'Glyma.08G061366' => 'gma', 'Glyma.08G061432' => 'gma', 'Glyma.08G112400' => 'gma', 'Glyma.08G112500' => 'gma', 'Glyma.08G343900' => 'gma', 'Glyma.09G249000' => 'gma', 'Glyma.12G140100' => 'gma', 'Glyma.13G250100' => 'gma', 'Glyma.15G064100' => 'gma', 'Glyma.18G151900' => 'gma', 'Glyma.18G243400' => 'gma', 'Gohir.A01G072100' => 'ghi', 'Gohir.A04G023566' => 'ghi', 'Gohir.A05G317000' => 'ghi', 'Gohir.A06G121800' => 'ghi', 'Gohir.A07G158400' => 'ghi', 'Gohir.A07G196400' => 'ghi', 'Gohir.A08G079650' => 'ghi', 'Gohir.A10G017700' => 'ghi', 'Gohir.A11G142800' => 'ghi', 'Gohir.A11G281700' => 'ghi', 'Gohir.A13G005100' => 'ghi', 'Gohir.A13G114800' => 'ghi', 'Gohir.D01G058900' => 'ghi', 'Gohir.D05G318700' => 'ghi', 'Gohir.D05G363700' => 'ghi', 'Gohir.D06G126000' => 'ghi', 'Gohir.D07G167800' => 'ghi', 'Gohir.D07G202800' => 'ghi', 'Gohir.D08G089400' => 'ghi', 'Gohir.D09G070333' => 'ghi', 'Gohir.D10G018000' => 'ghi', 'Gohir.D11G149100' => 'ghi', 'Gohir.D11G294300' => 'ghi', 'Gohir.D13G004800' => 'ghi', 'Gohir.D13G117601' => 'ghi', 'Gorai.001G228200' => 'gra', 'Gorai.002G079900' => 'gra', 'Gorai.004G094100' => 'gra', 'Gorai.006G084800' => 'gra', 'Gorai.007G159900' => 'gra', 'Gorai.007G317500' => 'gra', 'Gorai.009G341700' => 'gra', 'Gorai.009G428900' => 'gra', 'Gorai.010G146700' => 'gra', 'Gorai.011G020000' => 'gra', 'Gorai.013G005200' => 'gra', 'Gorai.013G132200' => 'gra', 'Gorai.N002300' => 'gra', 'GSVIVG01005275001' => 'vvi', 'GSVIVG01005299001' => 'vvi', 'GSVIVG01014548001' => 'vvi', 'GSVIVG01019067001' => 'vvi', 'GSVIVG01025411001' => 'vvi', 'GSVIVG01033439001' => 'vvi', 'HanXRQChr01g0004461' => 'han', 'HanXRQChr01g0014211' => 'han', 'HanXRQChr05g0137951' => 'han', 'HanXRQChr06g0171791' => 'han', 'HanXRQChr08g0231871' => 'han', 'HanXRQChr09g0257601' => 'han', 'HanXRQChr10g0291661' => 'han', 'HanXRQChr11g0332181' => 'han', 'HanXRQChr11g0344901' => 'han', 'HanXRQChr13g0404121' => 'han', 'HanXRQChr14g0453341' => 'han', 'HanXRQChr15g0492191' => 'han', 'HanXRQChr16g0526951' => 'han', 'Haze_03599' => 'cav', 'Haze_04589' => 'cav', 'Haze_06640' => 'cav', 'Haze_06651' => 'cav', 'Haze_09571' => 'cav', 'Haze_22980' => 'cav', 'Haze_22981' => 'cav', 'Hma1.2p1_0161F.1_g071430' => 'hma', 'Hma1.2p1_0161F.1_g071436' => 'hma', 'Hma1.2p1_0337F.1_g129440' => 'hma', 'Hma1.2p1_0809F.1_g221830' => 'hma', 'Hma1.2p1_0824F.1_g224730' => 'hma', 'Hma1.2p1_0831F.1_g225430' => 'hma', 'Hma1.2p1_0843F.1_g227200' => 'hma', 'Hma1.2p1_0843F.1_g227220' => 'hma', 'Hma1.2p1_0905F.1_g235365' => 'hma', 'Hma1.2p1_0959F.1_g241610' => 'hma', 'Hma1.2p1_1769F.1_g301600' => 'hma', 'HPP92_000876' => 'vpl', 'HPP92_000915' => 'vpl', 'HPP92_001342' => 'vpl', 'HPP92_001402' => 'vpl', 'HPP92_003552' => 'vpl', 'HPP92_005892' => 'vpl', 'HPP92_010127' => 'vpl', 'HPP92_012338' => 'vpl', 'HPP92_012375' => 'vpl', 'HPP92_014102' => 'vpl', 'HPP92_015917' => 'vpl', 'HPP92_015938' => 'vpl', 'HPP92_016327' => 'vpl', 'HPP92_017555' => 'vpl', 'HPP92_020683' => 'vpl', 'HPP92_028152' => 'vpl', 'Hund02158' => 'sun', 'Hund02797' => 'sun', 'Hund07575' => 'sun', 'Hund09471' => 'sun', 'Hund21309' => 'sun', 'Hund21643' => 'sun', 'Hund23379' => 'sun', 'Hund23549' => 'sun', 'Lalb_Chr01g0006271' => 'lal', 'Lalb_Chr01g0020551' => 'lal', 'Lalb_Chr01g0021981' => 'lal', 'Lalb_Chr03g0030241' => 'lal', 'Lalb_Chr03g0038741' => 'lal', 'Lalb_Chr03g0041071' => 'lal', 'Lalb_Chr05g0218031' => 'lal', 'Lalb_Chr07g0186681' => 'lal', 'Lalb_Chr07g0186691' => 'lal', 'Lalb_Chr09g0327211' => 'lal', 'Lalb_Chr13g0294941' => 'lal', 'Lalb_Chr15g0090191' => 'lal', 'Lalb_Chr19g0126151' => 'lal', 'Lalb_Chr19g0134641' => 'lal', 'Lj1g0001266' => 'lja', 'Lj1g0028134' => 'lja', 'Lj1P101T31' => 'lonja', 'Lj1P1219T8' => 'lonja', 'Lj1P549T8' => 'lonja', 'Lj1P552T9' => 'lonja', 'Lj1P579T30' => 'lonja', 'Lj2P1116T6' => 'lonja', 'Lj2P716T13' => 'lonja', 'Lj2P716T9' => 'lonja', 'Lj3g0004685' => 'lja', 'Lj4g0003071' => 'lja', 'Lj4g0008393' => 'lja', 'Lj4g0011257' => 'lja', 'Lj6g0006209' => 'lja', 'Lj8P163T31' => 'lonja', 'Lsat_1_v5_gn_0_14761' => 'lsa', 'Lsat_1_v5_gn_1_124060' => 'lsa', 'Lsat_1_v5_gn_1_67761' => 'lsa', 'Lsat_1_v5_gn_1_67781' => 'lsa', 'Lsat_1_v5_gn_2_101660' => 'lsa', 'Lsat_1_v5_gn_5_178260' => 'lsa', 'Lsat_1_v5_gn_7_107841' => 'lsa', 'Lsat_1_v5_gn_8_97621' => 'lsa', 'Lsat_1_v5_gn_9_16421' => 'lsa', 'Manes.03G088200' => 'mes', 'Manes.03G088300' => 'mes', 'Manes.12G003900' => 'mes', 'Manes.12G059100' => 'mes', 'Manes.13G004000' => 'mes', 'Manes.13G054800' => 'mes', 'Manes.15G079600' => 'mes', 'Manes.15G105900' => 'mes', 'Manes.16G015700' => 'mes', 'Manes.17G030900' => 'mes', 'Mapoly0062s0005' => 'mpo', 'MBI01_g46866_MAGBIO' => 'mbi', 'MBI01_g46867_MAGBIO' => 'mbi', 'MBI01_g48122_MAGBIO' => 'mbi', 'MBI01_g48123_MAGBIO' => 'mbi', 'MBI02_g37277_MAGBIO' => 'mbi', 'MBI11_g00124_MAGBIO' => 'mbi', 'MBI14_g39675_MAGBIO' => 'mbi', 'MBI18_g38399_MAGBIO' => 'mbi', 'MD01G1090100' => 'mdo', 'MD03G1007700' => 'mdo', 'MD03G1007800' => 'mdo', 'MD03G1215600' => 'mdo', 'MD04G1246600' => 'mdo', 'MD05G1158400' => 'mdo', 'MD05G1334600' => 'mdo', 'MD10G1151400' => 'mdo', 'MD10G1309500' => 'mdo', 'MD11G1010900' => 'mdo', 'MD11G1011000' => 'mdo', 'MD11G1230200' => 'mdo', 'MD12G1263600' => 'mdo', 'Medtr2g010970' => 'mtr', 'Medtr4g064460' => 'mtr', 'Medtr4g081560' => 'mtr', 'Medtr4g091930' => 'mtr', 'Medtr4g091970' => 'mtr', 'Medtr4g091980' => 'mtr', 'Medtr7g053107' => 'mtr', 'Medtr7g080280' => 'mtr', 'Medtr8g085580' => 'mtr', 'Medtr8g085590' => 'mtr', 'MELO3C008555.2' => 'cme', 'MELO3C012725.2' => 'cme', 'MELO3C014673.2' => 'cme', 'MELO3C015079.2' => 'cme', 'MELO3C016608.2' => 'cme', 'MELO3C018161.2' => 'cme', 'Migut.D00740' => 'egut', 'Migut.D02528' => 'egut', 'Migut.F01863' => 'egut', 'Migut.F02107' => 'egut', 'Migut.M01249' => 'egut', 'Migut.M01832' => 'egut', 'Migut.N00573' => 'egut', 'Migut.N00667' => 'egut', 'MSTRG.12752' => 'ama', 'MSTRG.12785' => 'ama', 'MSTRG.13165' => 'ama', 'MSTRG.14399' => 'ama', 'MSTRG.17969' => 'ama', 'MSTRG.18007' => 'ama', 'MSTRG.18498' => 'ama', 'MSTRG.20949' => 'ama', 'MSTRG.333' => 'ama', 'MSTRG.6875' => 'ama', 'Nitab4.5_0000038g0170' => 'nta', 'Nitab4.5_0000042g0070' => 'nta', 'Nitab4.5_0000207g0400' => 'nta', 'Nitab4.5_0000254g0250' => 'nta', 'Nitab4.5_0000552g0120' => 'nta', 'Nitab4.5_0000775g0110' => 'nta', 'Nitab4.5_0001059g0040' => 'nta', 'Nitab4.5_0001429g0010' => 'nta', 'Nitab4.5_0002167g0090' => 'nta', 'Nitab4.5_0002229g0070' => 'nta', 'Nitab4.5_0002311g0120' => 'nta', 'Nitab4.5_0003045g0060' => 'nta', 'Nitab4.5_0003190g0040' => 'nta', 'Nitab4.5_0003736g0050' => 'nta', 'Nitab4.5_0003736g0070' => 'nta', 'Nitab4.5_0004389g0040' => 'nta', 'Nitab4.5_0004566g0010' => 'nta', 'Nitab4.5_0004616g0010' => 'nta', 'Nitab4.5_0008954g0010' => 'nta', 'Nitab4.5_0012549g0010' => 'nta', 'Nn1g03760' => 'nnu', 'Nn1g06905' => 'nnu', 'Nn1g08302' => 'nnu', 'Nn2g15785' => 'nnu', 'Nn2g15786' => 'nnu', 'Nn7g35923' => 'nnu', 'Nn7g35925' => 'nnu', 'Oeu003659.1' => 'oeu', 'Oeu005437.1' => 'oeu', 'Oeu013416.1' => 'oeu', 'Oeu013615.1' => 'oeu', 'Oeu017146.1' => 'oeu', 'Oeu033929.1' => 'oeu', 'Oeu040301.1' => 'oeu', 'Oeu040302.1' => 'oeu', 'Oeu049586.1' => 'oeu', 'Oeu049587.1' => 'oeu', 'Oeu050576.1' => 'oeu', 'Oeu052331.1' => 'oeu', 'Oeu058616.1' => 'oeu', 'Oeu060532.1' => 'oeu', 'Oeu064497.1' => 'oeu', 'Os01g0913100' => 'osa', 'Os03g0692700' => 'osa', 'Os03g0693400' => 'osa', 'Os05g0221200' => 'osa', 'Os09g0357850' => 'osa', 'Os12g0462700' => 'osa', 'Peaxi162Scf00100g00048' => 'pax', 'Peaxi162Scf00335g00310' => 'pax', 'Peaxi162Scf00336g00036' => 'pax', 'Peaxi162Scf00372g00210' => 'pax', 'Peaxi162Scf00583g00012' => 'pax', 'Peaxi162Scf00931g00043' => 'pax', 'Peaxi162Scf01365g00026' => 'pax', 'PGR004G1837' => 'pgr', 'PGR004G2119' => 'pgr', 'PGR031G0403' => 'pgr', 'PGR083G2002' => 'pgr', 'PGR102G2471' => 'pgr', 'PGR119G0386' => 'pgr', 'PGR119G2239' => 'pgr', 'PGR119G2442' => 'pgr', 'PGSC0003DMG400013494' => 'stu', 'PGSC0003DMG400020654' => 'stu', 'PGSC0003DMG400020879' => 'stu', 'PGSC0003DMG400021710' => 'stu', 'PGSC0003DMG400025016' => 'stu', 'PGSC0003DMG400031346' => 'stu', 'PGSC0003DMG400032181' => 'stu', 'Phvul.002G219500' => 'pvu', 'Phvul.002G234500' => 'pvu', 'Phvul.002G234700' => 'pvu', 'Phvul.006G195300' => 'pvu', 'Phvul.008G053100' => 'pvu', 'Phvul.008G135900' => 'pvu', 'Phvul.008G136600' => 'pvu', 'Phvul.011G146900' => 'pvu', 'Potri.001G008240' => 'ptr', 'Potri.001G008320' => 'ptr', 'Potri.001G008400' => 'ptr', 'Potri.001G410300' => 'ptr', 'Potri.002G238900' => 'ptr', 'Potri.003G217200' => 'ptr', 'Potri.003G217300' => 'ptr', 'Potri.004G029600' => 'ptr', 'Potri.011G032600' => 'ptr', 'Potri.011G129900' => 'ptr', 'Potri.014G177800' => 'ptr', 'Pp3c26_3340' => 'ppa', 'Pp3c4_23380' => 'ppa', 'Prupe.4G030700' => 'ppe', 'Prupe.4G197200' => 'ppe', 'Prupe.6G009400' => 'ppe', 'Prupe.6G009800' => 'ppe', 'Prupe.6G362800' => 'ppe', 'Prupe.7G179800' => 'ppe', 'Prupe.8G189800' => 'ppe', 'Psat0s3891g0120' => 'psa', 'Psat1g210720' => 'psa', 'Psat3g102560' => 'psa', 'Psat7g073320' => 'psa', 'Psat7g073360' => 'psa', 'Psat7g073400' => 'psa', 'Psat7g107480' => 'psa', 'Psat7g107560' => 'psa', 'Psat7g160240' => 'psa', 'PSO017G2474' => 'pso', 'PSO339G5137' => 'pso', 'PSO384G0006' => 'pso', 'PSO384G0183' => 'pso', 'PSO541G3582' => 'pso', 'PSO675G1189' => 'pso', 'PSO675G8528' => 'pso', 'QL01p008034' => 'qlo', 'QL01p008041' => 'qlo', 'QL05p077819' => 'qlo', 'QL08p014570' => 'qlo', 'QL09p046870' => 'qlo', 'RcHm_v2.0_Chr3g0447641' => 'rch', 'RcHm_v2.0_Chr4g0387541' => 'rch', 'RcHm_v2.0_Chr5g0004811' => 'rch', 'RcHm_v2.0_Chr5g0036931' => 'rch', 'RcHm_v2.0_Chr5g0081571' => 'rch', 'RcHm_v2.0_Chr5g0081761' => 'rch', 'RcHm_v2.0_Chr5g0081931' => 'rch', 'RcHm_v2.0_Chr5g0081981' => 'rch', 'RcHm_v2.0_Chr5g0082001' => 'rch', 'RcHm_v2.0_Chr5g0082141' => 'rch', 'RcHm_v2.0_Chr5g0082171' => 'rch', 'RcHm_v2.0_Chr5g0082211' => 'rch', 'RcHm_v2.0_Chr5g0082231' => 'rch', 'RcHm_v2.0_Chr5g0082391' => 'rch', 'RcHm_v2.0_Chr5g0082501' => 'rch', 'RcHm_v2.0_Chr5g0082531' => 'rch', 'RcHm_v2.0_Chr5g0082751' => 'rch', 'RcHm_v2.0_Chr5g0082781' => 'rch', 'RcHm_v2.0_Chr6g0259771' => 'rch', 'RcHm_v2.0_Chr6g0282751' => 'rch', 'Rhsim01G0185300' => 'rsi', 'Rhsim01G0185400' => 'rsi', 'Rhsim01G0248300' => 'rsi', 'Rhsim13G0163400' => 'rsi', 'RhsimUnG0254900' => 'rsi', 'Sabra01G0006400' => 'sbr', 'Sabra01G0006500' => 'sbr', 'Sabra02G0181900' => 'sbr', 'Sabra03G0162200' => 'sbr', 'Sabra04G0016600' => 'sbr', 'Sabra11G0025800' => 'sbr', 'Sabra11G0117300' => 'sbr', 'Sabra14G0136000' => 'sbr', 'Sabra16G0276600' => 'sbr', 'Sabra16G0280900' => 'sbr', 'SalBow1G0273' => 'sbo', 'SalBow1G1466' => 'sbo', 'SalBow1G2885' => 'sbo', 'SalBow1G3005' => 'sbo', 'SalBow1G4602' => 'sbo', 'SalBow1G4684' => 'sbo', 'SalBow1G5009' => 'sbo', 'SalBow1G5452' => 'sbo', 'SalBow2G0901' => 'sbo', 'SalBow3G2053' => 'sbo', 'SalBow3G3219' => 'sbo', 'SalBow3G3971' => 'sbo', 'SalBow6G5592' => 'sbo', 'SalBow6G5952' => 'sbo', 'SalBow7G0590' => 'sbo', 'SalBow7G3871' => 'sbo', 'SalBow8G2385' => 'sbo', 'Sc03g0009440' => 'sci', 'Sc05g0001730' => 'sci', 'Sc09g0000230' => 'sci', 'Sc09g0000240' => 'sci', 'Sc13g0000040' => 'sci', 'Sc16g0012060' => 'sci', 'Sc17g0006860' => 'sci', 'Sc24g0003390' => 'sci', 'Sed0001587' => 'sed', 'Sed0009718' => 'sed', 'Sed0011300' => 'sed', 'Sed0011743' => 'sed', 'Sed0018796' => 'sed', 'Sed0021744' => 'sed', 'Sed0024881' => 'sed', 'SEGI_24719' => 'sgi', 'SEGI_27636' => 'sgi', 'SEGI_30105' => 'sgi', 'SEGI_33653' => 'sgi', 'SEGI_34322' => 'sgi', 'SEGI_40499' => 'sgi', 'SGA_v2.0_scaffold122G33191' => 'sas', 'SGA_v2.0_scaffold18G08314' => 'sas', 'SGA_v2.0_scaffold29G12088' => 'sas', 'SGA_v2.0_scaffold495G52456' => 'sas', 'SGA_v2.0_scaffold6G03280' => 'sas', 'SGA_v2.0_scaffold6G03426' => 'sas', 'SGA_v2.0_scaffold77G25298' => 'sas', 'SGA_v2.0_scaffold7G03898' => 'sas', 'SHI02134' => 'shi', 'SHI10246' => 'shi', 'SHI31260' => 'shi', 'SMO141G0059' => 'smo', 'SMO170G0069' => 'smo', 'SMO334G0071' => 'smo', 'Solyc01g005980.4' => 'sly', 'Solyc02g079790.3' => 'sly', 'Solyc03g078160.3' => 'sly', 'Solyc05g013240.4' => 'sly', 'Solyc06g007620.3' => 'sly', 'Solyc07g063860.4' => 'sly', 'Solyc10g006590.3' => 'sly', 'Sopen01g001990' => 'spe', 'Sopen01g016530' => 'spe', 'Sopen02g024560' => 'spe', 'Sopen03g020880' => 'spe', 'Sopen05g007980' => 'spe', 'Sopen06g002510' => 'spe', 'Sopen07g031990' => 'spe', 'Sp1g40930' => 'spa', 'Sp2g02890' => 'spa', 'Sp2g18820' => 'spa', 'Sp3g06370' => 'spa', 'Sp3g06380' => 'spa', 'Sp6g16500' => 'spa', 'Sp6g24530' => 'spa', 'Sp6g27790' => 'spa', 'TAR471G0002' => 'tar', 'TAR623G1277' => 'tar', 'TAR623G1466' => 'tar', 'TAR624G0263' => 'tar', 'TAR626G1195' => 'tar', 'TAR633G0302' => 'tar', 'TAR633G2389' => 'tar', 'TAR633G2591' => 'tar', 'TAR636G3449' => 'tar', 'THA.LOC104804642' => 'tha', 'THA.LOC104807530' => 'tha', 'THA.LOC104810335' => 'tha', 'THA.LOC104813402' => 'tha', 'THA.LOC104815660' => 'tha', 'THA.LOC104818999' => 'tha', 'THA.LOC104822466' => 'tha', 'THA.LOC104826648' => 'tha', 'THA.LOC104827171' => 'tha', 'Thecc.01G210400' => 'tca', 'Thecc.05G190400' => 'tca', 'Thecc.06G206200' => 'tca', 'Thecc.07G059000' => 'tca', 'Thecc.09G211100' => 'tca', 'Thecc.09G211300' => 'tca', 'Thecc.K0007900' => 'tca', 'Thhalv10005002m.g' => 'esa', 'Thhalv10011815m.g' => 'esa', 'Thhalv10014784m.g' => 'esa', 'Thhalv10014810m.g' => 'esa', 'Thhalv10014885m.g' => 'esa', 'Thhalv10021662m.g' => 'esa', 'Thhalv10023736m.g' => 'esa', 'TPR.G11818' => 'tpr', 'TPR.G13905' => 'tpr', 'TPR.G13931' => 'tpr', 'TPR.G26828' => 'tpr', 'TPR.G269' => 'tpr', 'TPR.G32617' => 'tpr', 'TPR.G33866' => 'tpr', 'TWI18G0149' => 'twi', 'TWI32G0573' => 'twi', 'TWI34G0696' => 'twi', 'TWI36G0738' => 'twi', 'TWI38G1448' => 'twi', 'TWI38G1477' => 'twi', 'TWI38G1927' => 'twi', 'TWI60G1469' => 'twi', 'TWI63G0990' => 'twi', 'TWI75G1182' => 'twi', 'unitig_0.g2054' => 'ugi', 'unitig_0.g416' => 'ugi', 'unitig_52.g17514' => 'ugi', 'unitig_747.g21563' => 'ugi', 'vmacro02820' => 'vma', 'vmacro03744' => 'vma', 'vmacro09594' => 'vma', 'vmacro12613' => 'vma', 'vmacro12614' => 'vma', 'VMungo0251G0264' => 'vmu', 'VMungo0251G1140' => 'vmu', 'VMungo0251G1329' => 'vmu', 'VMungo0540G1489' => 'vmu', 'VMungo1127G1346' => 'vmu', 'VMungo1383G0842' => 'vmu', 'VMungo1383G0876' => 'vmu', 'Zm00001eb053630' => 'zma', 'Zm00001eb053680' => 'zma', 'Zm00001eb106580' => 'zma', 'Zm00001eb143640' => 'zma', 'Zm00001eb146640' => 'zma', 'Zm00001eb147280' => 'zma', 'Zm00001eb197770' => 'zma', 'Zm00001eb217080' => 'zma', 'Zm00001eb323590' => 'zma', 'Zm00001eb342560' => 'zma' ) $gf_id = 'HOM05D000687' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000687' ) $data_identifier = 'HOM05D000687' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 16, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 11, 'vpl' => (int) 16, 'sun' => (int) 8, 'lal' => (int) 14, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 13, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 8, 'ama' => (int) 10, 'nta' => (int) 20, 'nnu' => (int) 7, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 11, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 20, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 17, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb342560' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1